DreEX0018858 @ danRer10
Exon Skipping
Gene
ENSDARG00000012341 | capn9
Description
calpain 9 [Source:ZFIN;Acc:ZDB-GENE-010724-2]
Coordinates
chr1:53236694-53238440:-
Coord C1 exon
chr1:53238272-53238440
Coord A exon
chr1:53236861-53236944
Coord C2 exon
chr1:53236694-53236779
Length
84 bp
Sequences
Splice sites
3' ss Seq
TTGTGTTTCCGTTTCACTAGATC
3' ss Score
8.77
5' ss Seq
GAGGTGAAC
5' ss Score
4.07
Exon sequences
Seq C1 exon
GCTGAACGGCAGCTATGAAGCCCTGAAAGGTGGAAGCACAATGGAGGCCATGGAGGACTTTACTGGAGGTGTGGGTGAGATGTACGAGACGAAAAACGGACCCAACAACCTCTTCCTCATCCTCAAGAAAGCCATAGAGAGGGGGTCCATGCTTGGCTGCTCCATCGAC
Seq A exon
ATCACTAGTTCTGCTGAATCTGAAGCCCAAACCTCTACTGGTCTGGTGAAAGGCCACGCTTACTCCGTCACTGGAGTGGAAGAG
Seq C2 exon
GTCAACTACAGAGGAGCGAAGGTCCAGCTGATTCGTGTACGTAACCCCTGGGGTCAGGTGGAGTGGAACGGGCCGTGGAGTGACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012341-'6-7,'6-6,7-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.035 A=0.036 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(18.9=100)
A:
PF0064816=Peptidase_C2=FE(9.1=100)
C2:
PF0064816=Peptidase_C2=FE(9.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGAAAGGTGGAAGCACAA
R:
GGACCTTCGCTCCTCTGTAGT
Band lengths:
174-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]