GgaEX6030256 @ galGal4
Exon Skipping
Gene
ENSGALG00000011136 | CAPN9
Description
calpain 9 [Source:HGNC Symbol;Acc:HGNC:1486]
Coordinates
chr3:39822724-39824482:+
Coord C1 exon
chr3:39822724-39822892
Coord A exon
chr3:39824048-39824131
Coord C2 exon
chr3:39824397-39824482
Length
84 bp
Sequences
Splice sites
3' ss Seq
CATTGTTTTCCATATTTCAGACC
3' ss Score
8.56
5' ss Seq
GAGGTACGT
5' ss Score
10.2
Exon sequences
Seq C1 exon
GCTGAATGGCAGCTATGAGGCTCTGAAAGGAGGCAGTACAATAGAAGCCATGGAGGATTTCACTGGGGGAGTGGGAGAAATGTATGAGGTTAAAAAAGCTCCTGACAATTTCTATGAAATCCTAGAGAAAGCTCTGAAAAGATCGTCAATGGTGGGCTGCTCTATCGAT
Seq A exon
ACCAGCAGTGCTGCAGAGTCAGAAGCCAGGACACCCTTTGGCCTCATAAAAGGCCATGCTTACTCTGTAACCGGCATTGATGAG
Seq C2 exon
GTGAGCTATCAGGGCCAGAAAGTGCAGCTCATAAGAATAAGGAACCCCTGGGGACAAGTGGAGTGGAACGGGCCTTGGAGTGACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011136-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(18.9=100)
A:
PF0064816=Peptidase_C2=FE(9.1=100)
C2:
PF0064816=Peptidase_C2=FE(9.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCATGGAGGATTTCACTGGG
R:
CTTGTCCCCAGGGGTTCCTTA
Band lengths:
181-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]