RnoEX6061187 @ rn6
Exon Skipping
Gene
ENSRNOG00000018480 | Capn9
Description
calpain 9 [Source:RGD Symbol;Acc:70965]
Coordinates
chr19:57356017-57358883:+
Coord C1 exon
chr19:57356017-57356185
Coord A exon
chr19:57357303-57357386
Coord C2 exon
chr19:57358798-57358883
Length
84 bp
Sequences
Splice sites
3' ss Seq
CTGGTCTTCCTCTGTTCTAGACC
3' ss Score
10.59
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
GCTGAACGGGAGTTACGAGGCACTGAAGGGGGGCAGCGCCATCGAAGCCATGGAGGACTTCACCGGGGGTGTGGCTGAGAACTTCCAAATCCGAGAGGCACCAGAGGATTTCTACGAGATTCTGGAGAAGGCCCTGCGGCGTGGTTCCTTGCTGGGCTGCTCCATAGAT
Seq A exon
ACCCTGAATGCCTCAGAATCTGAAGCCCGCACACCTTTGGGCCTCATTAAGGGCCATGCCTACACTGTGACTGGACTCGACCAG
Seq C2 exon
GTAAACTTCCACGGCCAGAGAATCAAGCTCATCAGAGTCCGTAACCCTTGGGGCCAGGTGGAATGGAACGGGCCATGGAGCGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018480-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.034
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(18.9=100)
A:
PF0064816=Peptidase_C2=FE(9.1=100)
C2:
PF0064816=Peptidase_C2=FE(9.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAAGCCATGGAGGACTTCAC
R:
CCCAAGGGTTACGGACTCTGA
Band lengths:
179-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]