HsaEX0012387 @ hg38
Exon Skipping
Gene
ENSG00000135773 | CAPN9
Description
calpain 9 [Source:HGNC Symbol;Acc:HGNC:1486]
Coordinates
chr1:230747384-230759630:+
Coord C1 exon
chr1:230747384-230747709
Coord A exon
chr1:230755337-230755406
Coord C2 exon
chr1:230759512-230759630
Length
70 bp
Sequences
Splice sites
3' ss Seq
TAACACTCTCATTCCTCCAGGAA
3' ss Score
9.79
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
ACTCAGCCCAGTGGCCCTCTGAGCTGTTCCTTCTTGACCGGCACACACAGCTCGCTTCTTCACTTTCTTTTCCATCCACTGCCGGACCCAAGCCAGCCTTCCAGGGAGCAGCCATGCCTTACCTCTACCGGGCCCCAGGGCCTCAGGCACACCCGGTTCCCAAGGACGCCCGGATCACCCACTCCTCAGGCCAGAGCTTTGAGCAAATGAGGCAGGAGTGCCTGCAGAGAGGCACCCTGTTTGAGGATGCAGACTTCCCAGCCAGCAATTCCTCCCTGTTCTACAGTGAGAGGCCGCAGATCCCCTTTGTGTGGAAACGACCAGGG
Seq A exon
GAAATCGTGAAAAACCCAGAATTCATTCTTGGAGGGGCCACCAGGACTGATATCTGCCAGGGAGAGCTGG
Seq C2 exon
GAGACTGCTGGCTATTAGCCGCCATCGCCTCCCTTACGCTTAATCAAAAAGCACTGGCCAGAGTCATCCCCCAGGACCAAAGCTTTGGCCCTGGTTATGCCGGGATATTCCATTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135773-'0-1,'0-0,4-1
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.179 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=WD(100=42.3),PF0064816=Peptidase_C2=PU(0.1=0.0)
A:
PF0064816=Peptidase_C2=FE(7.8=100)
C2:
PF0064816=Peptidase_C2=FE(13.2=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGCACCCTGTTTGAGGAT
R:
GATGACTCTGGCCAGTGCTTT
Band lengths:
167-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development