RnoEX6061191 @ rn6
Exon Skipping
Gene
ENSRNOG00000018480 | Capn9
Description
calpain 9 [Source:RGD Symbol;Acc:70965]
Coordinates
chr19:57341938-57351665:+
Coord C1 exon
chr19:57341938-57342181
Coord A exon
chr19:57349417-57349486
Coord C2 exon
chr19:57351547-57351665
Length
70 bp
Sequences
Splice sites
3' ss Seq
AGATGCTCTCACTCCTCCAGGAA
3' ss Score
9.22
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
TTTTCCTCTGCTAGGCTGTGGAGAAGTAGTCATGCCTTACCTGCATCGGTCCCTGAGACCCCAGCCACAGCCAGTCCCCAGGGATGCCAGGACTGTCCACTCCTCGGGCCACAGCTTTGAGCAGCTGAGGCAAAGCTGTCTGCAGTCGGGCACCTTGTTTGAGGATGCTGACTTCCCTGCCAGCAATAGTTCACTGTTCTACAGCGAGAGGCCCCAGGTCCCCTTTGTGTGGAAGCGGCCAGGG
Seq A exon
GAAATTGTGGAAAACCCAGAATTCATTCTGGGAGGGGCCACCAGGACCGACATCTGCCAAGGGGAACTGG
Seq C2 exon
GAGACTGCTGGCTCCTGGCCGCCATTGCCTCCCTAACCCTCAATCAGAAAGCACTGGCCAGAGTGGTACCCCAGGACCAAGGATTTGGTTCTGGCTATGCTGGGATATTTCACTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018480-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.296 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=PU(9.8=40.8)
A:
PF0064816=Peptidase_C2=FE(7.8=100)
C2:
PF0064816=Peptidase_C2=FE(13.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGCCAGCAATAGTTCACT
R:
ATCCCAGCATAGCCAGAACCA
Band lengths:
176-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]