MmuEX6039322 @ mm10
Exon Skipping
Gene
ENSMUSG00000031981 | Capn9
Description
calpain 9 [Source:MGI Symbol;Acc:MGI:1920897]
Coordinates
chr8:124576113-124591798:+
Coord C1 exon
chr8:124576113-124576220
Coord A exon
chr8:124589033-124589102
Coord C2 exon
chr8:124591680-124591798
Length
70 bp
Sequences
Splice sites
3' ss Seq
AGATGCTCTCAATCTTCCAGGAA
3' ss Score
8.48
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
ATCTTTTTCCTCTAAGCTGCGGGGAAGCTGTCATGCCTTACCTGCATCGGTCCCTGAGGCCACAGCCACAGCCAGTCCCCGGGGATGCCAGGACTATCCACTCCTCAG
Seq A exon
GAAATTGTGGAAAAACCAGAATTCATTCTTGGAGGGGCCACCAGGACCGACATTTGCCAAGGGGAGCTGG
Seq C2 exon
GAGACTGCTGGCTCCTGGCGGCCATTGCCTCCCTAACCCTCAATCAGAAAGCACTGACCAGGGTGGTTCCCCAGGACCAAGGATTTGGTTCTGGCTATGCCGGGATATTTCATTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031981-'1-3,'1-0,2-3=AN
Average complexity
A_C2
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.500 C2=0.118
Domain overlap (PFAM):
C1:
NO
A:
PF0064816=Peptidase_C2=FE(7.8=100)
C2:
PF0064816=Peptidase_C2=FE(13.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTTCCTCTAAGCTGCGGGG
R:
CACCCTGGTCAGTGCTTTCTG
Band lengths:
170-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types