GgaEX1012828 @ galGal3
Exon Skipping
Gene
ENSGALG00000011136 | CAPN9
Description
NA
Coordinates
chr3:42362333-42368968:+
Coord C1 exon
chr3:42362333-42362599
Coord A exon
chr3:42368358-42368427
Coord C2 exon
chr3:42368850-42368968
Length
70 bp
Sequences
Splice sites
3' ss Seq
TCTCACTCCCACTCTTTCAGGAC
3' ss Score
10.65
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
TTGCGCCCTGTTCTGCTAGACCTCAGCCCGCTGCACTTCTCCCTGTTGGGAGCCATGCCCTACCTCCTCCACGACTCAAAGCCGAGGCCACCACCACTGCCAAAGGAGGCACGTGTCACCCACAGCTCAGGGAAGGGCTACCAGGAGCTGAAGCAGGAGTGCCTGCGCAGCGGCTGCCTCTTTGAGGACCCTGACTTCCCCGCCAACAATGCCTCCCTTTTCTTCAGTGAAAAGCCACCGATTCCCTTCCTCTGGAAGAGGCCTGGG
Seq A exon
GACATTGTCAAAGATCCCAAGTTTATCCTCGAAGGAGCCACAAGAACTGACATTTGCCAAGGGGATCTTG
Seq C2 exon
GTGACTGCTGGCTATTAGCCGCCATAGCTTCTCTCACACTGAATGAGAAAACACTAGCAAGAGTAGTACCGCTGGATCAAAATTTTGGGCCAGGTTATGCTGGGATATTTCACTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011136-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.282 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=PU(9.8=40.8)
A:
PF0064816=Peptidase_C2=FE(7.8=100)
C2:
PF0064816=Peptidase_C2=FE(13.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCAGGAGCTGAAGCAGGAG
R:
GTGTGAGAGAAGCTATGGCGG
Band lengths:
168-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]