DreEX0018853 @ danRer10
Exon Skipping
Gene
ENSDARG00000012341 | capn9
Description
calpain 9 [Source:ZFIN;Acc:ZDB-GENE-010724-2]
Coordinates
chr1:53238730-53247349:-
Coord C1 exon
chr1:53247049-53247349
Coord A exon
chr1:53239835-53239904
Coord C2 exon
chr1:53238730-53238848
Length
70 bp
Sequences
Splice sites
3' ss Seq
TCTTTTATCCTGAATTTCAGGAA
3' ss Score
9.23
5' ss Seq
TGGGTATGT
5' ss Score
7.43
Exon sequences
Seq C1 exon
GTGAGTTTACATCTCTCACACTCACTCTCACACACAGTCTGTCATCCAGAGGCTCGTCTCAGTGTGTTTTAATTCTCGAGTTGTAGATTTGAAGATGCCCTACAGCGTGACTCTGCCGGGCAGCTCAGGACAGACGGCTGTAGTGGAGAGCACACAGGCTGATGGCAAGACATACGAGCAGCTGCGGAGGGAATGTTTGGAGAAGGGGAAGCTGTTCGAGGATCCAGACTTCCCTGCGGTGGACGGCTCGCTCTTCTACAGCCAGAGGGTCCCGGTTAACTTTGAATGGAAGCGGCCCGGG
Seq A exon
GAAATTTGCAAAGAGCCACAGTTCATCACCGGAGGAGCCACCAGGACCGACATCTGTCAGGGGCAGCTGG
Seq C2 exon
GAGACTGTTGGCTGTTGGCAGCGATTGCCTCTCTAACTCTCAAAGAGGAAACACTAAATAGAGTTGTACCAAATGACCAGACCTTCGATCGCGGTTATGCTGGAATCTTCCATTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012341-'0-3,'0-2,2-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.101 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=PU(9.8=42.0)
A:
PF0064816=Peptidase_C2=FE(7.8=100)
C2:
PF0064816=Peptidase_C2=FE(13.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGGCTGATGGCAAGACAT
R:
CTGCCAACAGCCAACAGTCTC
Band lengths:
170-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]