MmuEX6039322 @ mm9
Exon Skipping
Gene
ENSMUSG00000031981 | Capn9
Description
calpain 9 [Source:MGI Symbol;Acc:MGI:1920897]
Coordinates
chr8:127100011-127115698:+
Coord C1 exon
chr8:127100011-127100257
Coord A exon
chr8:127112933-127113002
Coord C2 exon
chr8:127115580-127115698
Length
70 bp
Sequences
Splice sites
3' ss Seq
AGATGCTCTCAATCTTCCAGGAA
3' ss Score
8.48
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
ACATCTTTTTCCTCTAAGCTGCGGGGAAGCTGTCATGCCTTACCTGCATCGGTCCCTGAGGCCACAGCCACAGCCAGTCCCCGGGGATGCCAGGACTATCCACTCCTCAGGTCAGAGCTTTGAGCAGCTGAGGCAGGGCTGCCTGCAGTCTGGCACCTTGTTTGAGGATGCTGACTTCCCTGCCAGCAATGTCTCCCTGTTCTACAGCGAGAGGCCCCAGGTCCCCTTTGTGTGGAAACGGCCAGGG
Seq A exon
GAAATTGTGGAAAAACCAGAATTCATTCTTGGAGGGGCCACCAGGACCGACATTTGCCAAGGGGAGCTGG
Seq C2 exon
GAGACTGCTGGCTCCTGGCGGCCATTGCCTCCCTAACCCTCAATCAGAAAGCACTGACCAGGGTGGTTCCCCAGGACCAAGGATTTGGTTCTGGCTATGCCGGGATATTTCATTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031981-'1-1,'1-0,2-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.282 A=0.500 C2=0.118
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=PU(9.8=40.8)
A:
PF0064816=Peptidase_C2=FE(7.8=100)
C2:
PF0064816=Peptidase_C2=FE(13.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTCTGGCACCTTGTTTGA
R:
CACCCTGGTCAGTGCTTTCTG
Band lengths:
168-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: