HsaEX0012391 @ hg38
Exon Skipping
Gene
ENSG00000135773 | CAPN9
Description
calpain 9 [Source:HGNC Symbol;Acc:HGNC:1486]
Coordinates
chr1:230772014-230779133:+
Coord C1 exon
chr1:230772014-230772099
Coord A exon
chr1:230774554-230774631
Coord C2 exon
chr1:230778973-230779133
Length
78 bp
Sequences
Splice sites
3' ss Seq
CCAATTTTGTTTACTCCTAGTTC
3' ss Score
5.96
5' ss Seq
CTGGTACCG
5' ss Score
4.81
Exon sequences
Seq C1 exon
GTAAGCTTCCGAGGCCAGAGAATCGAGCTCATCCGAATCCGGAACCCTTGGGGCCAGGTTGAGTGGAACGGGTCGTGGAGCGACAG
Seq A exon
TTCTCCGGAGTGGCGTTCTGTTGGTCCAGCTGAGCAGAAGCGTCTGTGTCACACTGCTCTGGATGATGGGGAATTCTG
Seq C2 exon
GATGGCATTTAAGGACTTCAAGGCCCACTTTGATAAAGTGGAGATCTGCAACCTCACTCCCGATGCCCTGGAGGAAGACGCGATCCACAAATGGGAGGTGACGGTCCATCAGGGAAGCTGGGTTCGCGGCTCCACGGCTGGGGGCTGCCGCAATTTCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135773-'11-11,'11-9,12-11
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.000 A=0.111 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(11.1=100)
A:
PF0064816=Peptidase_C2=FE(12.7=100)
C2:
PF0064816=Peptidase_C2=PD(6.4=34.5),PF0106717=Calpain_III=PU(16.3=43.6)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCCAGAGAATCGAGCTCAT
R:
GACCGTCACCTCCCATTTGTG
Band lengths:
181-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development