GgaEX6030254 @ galGal4
Exon Skipping
Gene
ENSGALG00000011136 | CAPN9
Description
calpain 9 [Source:HGNC Symbol;Acc:HGNC:1486]
Coordinates
chr3:39824397-39830687:+
Coord C1 exon
chr3:39824397-39824482
Coord A exon
chr3:39826521-39826598
Coord C2 exon
chr3:39830527-39830687
Length
78 bp
Sequences
Splice sites
3' ss Seq
TTAATTTTATTTTCTTGCAGCTC
3' ss Score
10.52
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
GTGAGCTATCAGGGCCAGAAAGTGCAGCTCATAAGAATAAGGAACCCCTGGGGACAAGTGGAGTGGAACGGGCCTTGGAGTGACAA
Seq A exon
CTCTCTAGAGTGGCGTTTGGTCAGCCCATCGGAGCAGAAGCGCTTGGCTCAGACAGCACTGGATGATGGAGAATTCTG
Seq C2 exon
GATGAAATTTGAAGATTTCAAAGTGCATTTTGATAAGGTTGAGATCTGCAACCTGACTCCAGATTCCCTGGAAGACAACACTACCCAAAAGTGGGAGGTGACCATCCATGAGGGGAGCTGGGTCCGGGGATCCACTGCAGGAGGATGCAGAAATTTTCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011136-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.018
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(9.5=100)
A:
PF0064816=Peptidase_C2=FE(8.8=100)
C2:
PF0064816=Peptidase_C2=PD(6.4=34.5),PF0106717=Calpain_III=PU(16.3=43.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCAGAAAGTGCAGCTCATA
R:
TGGATGGTCACCTCCCACTTT
Band lengths:
182-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]