DreEX0018859 @ danRer10
Exon Skipping
Gene
ENSDARG00000012341 | capn9
Description
calpain 9 [Source:ZFIN;Acc:ZDB-GENE-010724-2]
Coordinates
chr1:53235414-53236779:-
Coord C1 exon
chr1:53236694-53236779
Coord A exon
chr1:53235689-53235766
Coord C2 exon
chr1:53235414-53235574
Length
78 bp
Sequences
Splice sites
3' ss Seq
TTCTCATCTTGTCTTTTCAGTTC
3' ss Score
10.65
5' ss Seq
CTGGTATGT
5' ss Score
8.14
Exon sequences
Seq C1 exon
GTCAACTACAGAGGAGCGAAGGTCCAGCTGATTCGTGTACGTAACCCCTGGGGTCAGGTGGAGTGGAACGGGCCGTGGAGTGACAA
Seq A exon
TTCGAGAGAATGGACTGTCATTGACAGCTCAGAGAAGAAACGATTGCTGCAAAACTCCCTGGATGATGGAGAGTTCTG
Seq C2 exon
GATGGAGTTCGGAGACTTTAAATCCAACTACGATAAGGTTGAGATCTGTAACCTGTCTCCAGATGCTCTGTCCGATGACGTTTCCAAGCAGTGGGCTGTGAACCTGTTTGAAGGCAGCTGGATCAGGGGGTCCACCGCTGGCGGCTGCAGGAACTACATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012341-'8-9,'8-8,9-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.037 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(9.5=100)
A:
PF0064816=Peptidase_C2=FE(8.8=100)
C2:
PF0064816=Peptidase_C2=PD(6.4=34.5),PF0106717=Calpain_III=PU(16.4=43.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCCAGCTGATTCGTGTACG
R:
TCAAACAGGTTCACAGCCCAC
Band lengths:
177-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]