RnoEX6061185 @ rn6
Exon Skipping
Gene
ENSRNOG00000018480 | Capn9
Description
calpain 9 [Source:RGD Symbol;Acc:70965]
Coordinates
chr19:57358798-57362560:+
Coord C1 exon
chr19:57358798-57358883
Coord A exon
chr19:57362100-57362177
Coord C2 exon
chr19:57362400-57362560
Length
78 bp
Sequences
Splice sites
3' ss Seq
CTGTGGCTCTGTCCTCTCAGCTC
3' ss Score
8.48
5' ss Seq
CTGGTAGTG
5' ss Score
0.67
Exon sequences
Seq C1 exon
GTAAACTTCCACGGCCAGAGAATCAAGCTCATCAGAGTCCGTAACCCTTGGGGCCAGGTGGAATGGAACGGGCCATGGAGCGACAG
Seq A exon
CTCTCCTGAGTGGCGCTCCATGAGCCTGGAGGAGCAGAAGCGCCTAGGTCACACCGCCCTTGACGATGGAGAATTCTG
Seq C2 exon
GATGGCATTTGAGGACTTCAAGACCCATTTTGACAAAGTGGAGATCTGCAACCTCACGCCTGATGCCCTGGAGGACAACACCCTCCACAAGTGGGAGGTGACCATCCACCAAGGAAGCTGGGTTCGTGGCTCCACCGCCGGCGGCTGCCGCAACTTCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018480-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=0.148 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(9.5=100)
A:
PF0064816=Peptidase_C2=FE(8.8=100)
C2:
PF0064816=Peptidase_C2=PD(6.4=34.5),PF0106717=Calpain_III=PU(16.3=43.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGAGTCCGTAACCCTTGGG
R:
CAGCTTCCTTGGTGGATGGTC
Band lengths:
175-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]