BtaEX6103365 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010230 | CAPN1
Description
Bos taurus calpain 1, (mu/I) large subunit (CAPN1), mRNA. [Source:RefSeq mRNA;Acc:NM_174259]
Coordinates
chr29:44068598-44069409:+
Coord C1 exon
chr29:44068598-44068683
Coord A exon
chr29:44069046-44069120
Coord C2 exon
chr29:44069249-44069409
Length
75 bp
Sequences
Splice sites
3' ss Seq
GCAGTGCCCTTTTCCTGCAGCTC
3' ss Score
8.81
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
GTGAACTACCAGGGCCAGATGGTGAACCTGATCCGGATGCGGAACCCCTGGGGCGAGGTGGAGTGGACAGGAGCCTGGAGTGACGG
Seq A exon
CTCCTCGGAGTGGAACGGCGTGGACCCTTACATGCGGGAGCAGCTCCGGGTCAAGATGGAGGATGGGGAGTTCTG
Seq C2 exon
GATGTCCTTCCGAGACTTCATGCGTGAATTCACCCGCCTGGAGATCTGCAACCTGACACCCGACGCGCTCAAGAGCCAGAGGTTCCGCAACTGGAACACCACCCTGTACGAGGGCACCTGGCGGCGGGGGAGCACCGCGGGGGGCTGCCGCAACTACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010230-'11-10,'11-9,12-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(9.3=100)
A:
PF0064816=Peptidase_C2=FE(8.3=100)
C2:
PF0064816=Peptidase_C2=PD(6.3=34.5),PF0106717=Calpain_III=PU(15.0=43.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGATGGTGAACCTGATCC
R:
GTTCCAGTTGCGGAACCTCTG
Band lengths:
170-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]