GgaEX6029713 @ galGal4
Exon Skipping
Gene
ENSGALG00000010186 | CAPN1
Description
Calpain-1 catalytic subunit [Source:UniProtKB/Swiss-Prot;Acc:P00789]
Coordinates
chr3:29685619-29687166:-
Coord C1 exon
chr3:29687081-29687166
Coord A exon
chr3:29686789-29686863
Coord C2 exon
chr3:29685619-29685779
Length
75 bp
Sequences
Splice sites
3' ss Seq
TTTCCCTCCGGCTATTCCAGTTC
3' ss Score
7.64
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
GTGAACTACCGGGGTCAGCAGGAACAGCTCATCCGTATCAGAAACCCCTGGGGTCAGGTGGAGTGGACTGGAGCCTGGAGTGATGG
Seq A exon
TTCTTCCGAGTGGGACAACATTGACCCCAGCGACAGAGAAGAGCTGCAACTGAAGATGGAGGATGGAGAGTTTTG
Seq C2 exon
GATGTCTTTCCGGGACTTCATGAGGGAGTTCTCCAGGCTGGAGATCTGCAACCTAACCCCCGATGCCCTCACCAAAGATGAGCTCAGCAGGTGGCACACACAGGTGTTCGAGGGCACATGGCGCCGAGGGAGCACTGCTGGGGGCTGCAGGAACAACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010186-'8-10,'8-8,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.308 C2=0.036
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(9.3=100)
A:
PF0064816=Peptidase_C2=FE(8.3=100)
C2:
PF0064816=Peptidase_C2=PD(6.3=34.5),PF0106717=Calpain_III=PU(15.4=43.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGTATCAGAAACCCCTGGG
R:
CATGTGCCCTCGAACACCTG
Band lengths:
175-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]