BtaEX0006979 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021066 | CAPN11
Description
calpain 11 [Source:HGNC Symbol;Acc:HGNC:1478]
Coordinates
chr23:17814035-17814662:+
Coord C1 exon
chr23:17814035-17814120
Coord A exon
chr23:17814300-17814374
Coord C2 exon
chr23:17814502-17814662
Length
75 bp
Sequences
Splice sites
3' ss Seq
CCCACCTGTCTCTGCTCCAGCGC
3' ss Score
9.01
5' ss Seq
CTGGTCAGT
5' ss Score
6.6
Exon sequences
Seq C1 exon
GTCTCCTACCAAGGCAGGACAGAAACACTGATCCGAGTCCGGAATCCCTGGGGCCGGATTGAGTGGAATGGAGCCTGGAGTGACAA
Seq A exon
CGCCAAGGAGTGGGAGGAGGTGGCCCCAGATGTCCAGAGGCAGCTGCTGCACAGGAAGGAGGACGGGGAGTTCTG
Seq C2 exon
GATGTCCTACCAAGATTTCCTTGGCAACTTCACCCTCCTGGAAATCTGCAACGTGATACCCGACACGCTCTCCGGGGACTACAAGAGCTGTTGGCATACCACCTTCTACGAGGGCAGCTGGCGGAGGGGCAGCACCGCAGGGGGCTGCCGGAGCTACCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021066_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(9.3=100)
A:
PF0064816=Peptidase_C2=FE(8.3=100)
C2:
PF0064816=Peptidase_C2=PD(6.3=34.5),PF0106717=Calpain_III=PU(15.4=43.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTACCAAGGCAGGACAGA
R:
GCCAACAGCTCTTGTAGTCCC
Band lengths:
179-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development