DreEX0018798 @ danRer10
Exon Skipping
Gene
ENSDARG00000052702 | capn1a
Description
calpain 1, (mu/I) large subunit a [Source:ZFIN;Acc:ZDB-GENE-040426-1263]
Coordinates
chr13:42569901-42572917:-
Coord C1 exon
chr13:42572832-42572917
Coord A exon
chr13:42572682-42572756
Coord C2 exon
chr13:42569901-42570061
Length
75 bp
Sequences
Splice sites
3' ss Seq
GGTGTTTGTTCGCTCTCCAGCTC
3' ss Score
7.03
5' ss Seq
TTGGTGAGC
5' ss Score
7.43
Exon sequences
Seq C1 exon
GTGGAGTACAGGGGGCGGATGGAGAGGCTTATCCGCATCCGTAATCCTTGGGGTCAGGTAGAATGGACCGGAGCCTGGAGTGATAA
Seq A exon
CTCTCCTGAATGGGATGAGATTGATCCATCAGAGAAGGACGACTTGCACTTACAAATGGAGGATGGAGAGTTTTG
Seq C2 exon
GATGTCATTTGGTGAGTTTTTACGTCAGTTCTCCCGGCTGGAGATTTGCAATCTGACCCCTGATGCTCTGAGTGACGATGATATGAGCCACTGGAACACCATCAAGTTTCATGGAGCCTGGAGGAGAGGAAGCACTGCAGGAGGATGCCGAAATCATCCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000052702-'9-13,'9-12,10-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.365 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(9.3=100)
A:
PF0064816=Peptidase_C2=FE(8.3=100)
C2:
PF0064816=Peptidase_C2=PD(6.3=34.5),PF0106717=Calpain_III=PU(15.4=43.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCCGTAATCCTTGGGGTC
R:
CTCTCCTCCAGGCTCCATGAA
Band lengths:
180-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]