RnoEX6006200 @ rn6
Exon Skipping
Gene
ENSRNOG00000020935 | Capn1
Description
calpain 1 [Source:RGD Symbol;Acc:2267]
Coordinates
chr1:221362979-221364418:-
Coord C1 exon
chr1:221364333-221364418
Coord A exon
chr1:221363226-221363300
Coord C2 exon
chr1:221362979-221363139
Length
75 bp
Sequences
Splice sites
3' ss Seq
GCAGTGCCTGCTTTTCACAGCTC
3' ss Score
6.23
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
GTCACTTACCAGGGCCAGCGGGTGAACCTAATCCGGATGCGGAACCCCTGGGGTGAAGTGGAGTGGAAAGGACCCTGGAGTGACAA
Seq A exon
CTCCTATGAGTGGAACAAAGTGGACCCCTATGAACGTGAGCAGCTGAGGGTCAAGATGGAGGACGGGGAGTTCTG
Seq C2 exon
GATGTCCTTCCGGGACTTCATACGTGAGTTCACCAAACTGGAAATCTGCAACCTTACACCTGACGCCCTTAAGAGCAGAACCCTCCGGAACTGGAATACCACATTTTACGAGGGCACCTGGCGCCGGGGAAGCACTGCTGGAGGCTGCAGGAACTACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020935-'14-14,'14-13,15-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(9.3=100)
A:
PF0064816=Peptidase_C2=FE(8.3=100)
C2:
PF0064816=Peptidase_C2=PD(6.3=34.5),PF0106717=Calpain_III=PU(15.3=43.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAACCTAATCCGGATGCGG
R:
GGTGCCCTCGTAAAATGTGGT
Band lengths:
183-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]