DreEX6003634 @ danRer10
Exon Skipping
Gene
ENSDARG00000045199 | CAPN1 (1 of 2)
Description
calpain 1, (mu/I) large subunit [Source:HGNC Symbol;Acc:HGNC:1476]
Coordinates
chr7:6567875-6570293:-
Coord C1 exon
chr7:6570208-6570293
Coord A exon
chr7:6570041-6570115
Coord C2 exon
chr7:6567875-6568035
Length
75 bp
Sequences
Splice sites
3' ss Seq
TGTCTGATGTGTGTTTTCAGCTC
3' ss Score
9.73
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
GTGGTCTACAGGGGGAACATGACCAAACTGGTGCGCATCAGGAACCCGTGGGGGGAAGTGGAGTGGACTGGAGCCTGGAGCGACAA
Seq A exon
CTCTCGCGAATGGGACAATGTGGACCGCTCCGTCCGGGGCCGATTACAGAACCGCAGCGAGGACGGAGAGTTCTG
Seq C2 exon
GATGTCGTTCAGTGATTTTCTGCGCGAGTTCACCCGTTTGGAAATCTGTAACCTGACGGCGGACGCTCTCCAGGCCAGTCAGGTGAAGAAGTGGAGCACCGCCAACTATAACGGCGAGTGGAGGAGAGGAAGCACTGCAGGTGGCTGCAGGAACTATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045199-'10-11,'10-10,11-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.038 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(9.3=100)
A:
PF0064816=Peptidase_C2=FE(8.3=100)
C2:
PF0064816=Peptidase_C2=PD(6.3=34.5),PF0106717=Calpain_III=PU(15.8=43.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGGAACATGACCAAACTGG
R:
ACTTCTTCACCTGACTGGCCT
Band lengths:
168-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]