HsaEX6002898 @ hg38
Exon Skipping
Gene
ENSG00000014216 | CAPN1
Description
calpain 1 [Source:HGNC Symbol;Acc:HGNC:1476]
Coordinates
chr11:65187955-65188746:+
Coord C1 exon
chr11:65187955-65188040
Coord A exon
chr11:65188414-65188488
Coord C2 exon
chr11:65188586-65188746
Length
75 bp
Sequences
Splice sites
3' ss Seq
CAGAGCCCTGCTCCTCACAGCTC
3' ss Score
5.3
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
GTGAACTACCGAGGCCAGGTGGTGAGCCTGATCCGGATGCGGAACCCCTGGGGCGAGGTGGAGTGGACGGGAGCCTGGAGCGACAG
Seq A exon
CTCCTCAGAGTGGAACAACGTGGACCCATATGAACGGGACCAGCTCCGGGTCAAGATGGAGGACGGGGAGTTCTG
Seq C2 exon
GATGTCATTCCGAGACTTCATGCGGGAGTTCACCCGCCTGGAGATCTGCAACCTCACACCCGACGCCCTCAAGAGCCGGACCATCCGCAAATGGAACACCACACTCTACGAAGGCACCTGGCGGCGGGGGAGCACCGCGGGGGGCTGCCGAAACTACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000014216-'42-37,'42-36,44-37
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=PD(7.5=87.5)
A:
PF0064816=Peptidase_C2=FE(8.3=100)
C2:
PF0064816=Peptidase_C2=PD(6.3=34.5),PF0106717=Calpain_III=PU(15.2=43.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACTACCGAGGCCAGGTG
R:
TGTTCCATTTGCGGATGGTCC
Band lengths:
183-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains