RnoEX0016672 @ rn6
Exon Skipping
Gene
ENSRNOG00000026025 | Capn11
Description
calpain 11 [Source:RGD Symbol;Acc:1302946]
Coordinates
chr9:17741333-17741992:+
Coord C1 exon
chr9:17741333-17741418
Coord A exon
chr9:17741581-17741655
Coord C2 exon
chr9:17741829-17741992
Length
75 bp
Sequences
Splice sites
3' ss Seq
CCACCGTTTTCTCTCTGCAGAGC
3' ss Score
12.02
5' ss Seq
CTGGTCAGT
5' ss Score
6.6
Exon sequences
Seq C1 exon
GTTTACTACAGAGACAAGTTGGAAACCCTAATTCGAATCCAGAACCCCTGGGGCAGGATTGAGTGGAATGGAGCCTGGAGTGACAA
Seq A exon
AGCCAAGGAGTGGGAAGAGGTGATGCCGGAAGTTCAGATGCAGCTGCTGCACAAGAAGGAAGACGGGGAGTTCTG
Seq C2 exon
GATGTCCTATGAAGACTTCATGAGCAACTTTACATTGCTGGAGATTTGCAACCTCACCCCGGACGCGCTCTCCTCCTGGGATTACAAGAGCTGCTGGCACACAACCTTCTTTGAGGGCAGCTGGCGAAGGGGGAGCACTGCAGGGGGCTGCAGAAACTACCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026025-'7-11,'7-10,8-11
Average complexity
S
Mappability confidence:
88%=100=75%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(9.3=100)
A:
PF0064816=Peptidase_C2=FE(8.3=100)
C2:
PF0064816=Peptidase_C2=PD(6.3=33.9),PF0106717=Calpain_III=PU(15.2=42.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAATGGAGCCTGGAGTGACA
R:
GTAGTTTCTGCAGCCCCCTG
Band lengths:
182-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]