DreEX6099399 @ danRer10
Exon Skipping
Gene
ENSDARG00000052748 | capn1b
Description
calpain 1, (mu/I) large subunit b [Source:ZFIN;Acc:ZDB-GENE-060503-491]
Coordinates
chr22:26291284-26292109:-
Coord C1 exon
chr22:26292024-26292109
Coord A exon
chr22:26291863-26291937
Coord C2 exon
chr22:26291284-26291444
Length
75 bp
Sequences
Splice sites
3' ss Seq
TTTTTGCACTCCGATTTCAGTTC
3' ss Score
7.94
5' ss Seq
TTGGTAAAT
5' ss Score
4.94
Exon sequences
Seq C1 exon
GTGAATTTCCGTGGCAACAGAGAGAGATTGATCCGTATCCGAAACCCTTGGGGACAAGTTGAATGGACTGGGGCTTGGAGCGACAA
Seq A exon
TTCGTCCGAGTGGAATGGGATTGATCCATCGGAAAGAGAGGAACTGAACAACCACATGGAGGATGGCGAGTTTTG
Seq C2 exon
GATGTCATTTCAGGAGTTCAAACGTCAGTTTTCTCGTCTGGAGATCTGCAACCTCACTCCTGATGCTCTGAGTGATGATTCCCAACATTTCTGGAACACAATTCAGTTTAACGGCACTTGGAGGAAAGGAAGTACAGCAGGAGGCTGCAGGAACAATCCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000052748-'8-8,'8-7,9-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.462 C2=0.036
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(9.3=100)
A:
PF0064816=Peptidase_C2=FE(8.3=100)
C2:
PF0064816=Peptidase_C2=PD(6.3=34.5),PF0106717=Calpain_III=PU(15.8=43.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGTTGAATGGACTGGGGC
R:
GCCTCCTGCTGTACTTCCTTT
Band lengths:
178-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]