HsaEX6037290 @ hg38
Exon Skipping
Gene
ENSG00000135773 | CAPN9
Description
calpain 9 [Source:HGNC Symbol;Acc:HGNC:1486]
Coordinates
chr1:230787522-230791928:+
Coord C1 exon
chr1:230787522-230787602
Coord A exon
chr1:230790132-230790189
Coord C2 exon
chr1:230791864-230791928
Length
58 bp
Sequences
Splice sites
3' ss Seq
AATTGTCTCCACTTCAACAGGAC
3' ss Score
7.78
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
CCTCCAAAGCCAACTCCACCTGACCAGGAGACAGAGGAGGAGCAGCGGTTTCGGGCTCTGTTTGAACAAGTCGCTGGTGAG
Seq A exon
GACATGGAGGTGACAGCAGAGGAACTTGAGTATGTTTTAAATGCTGTGCTGCAAAAGA
Seq C2 exon
AAAAGGACATCAAATTCAAGAAGCTAAGCCTGATCTCCTGTAAAAACATCATTTCCCTGATGGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135773-'22-18,'22-17,23-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.630 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=PU(0.1=0.0)
A:
PF138331=EF-hand_8=FE(31.1=100)
C2:
PF138331=EF-hand_8=FE(34.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCAAAGCCAACTCCACCTG
R:
ATGATGTTTTTACAGGAGATCAGGCT
Band lengths:
132-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains