MmuEX6039314 @ mm10
Exon Skipping
Gene
ENSMUSG00000031981 | Capn9
Description
calpain 9 [Source:MGI Symbol;Acc:MGI:1920897]
Coordinates
chr8:124609093-124613481:+
Coord C1 exon
chr8:124609093-124609173
Coord A exon
chr8:124611503-124611560
Coord C2 exon
chr8:124613417-124613481
Length
58 bp
Sequences
Splice sites
3' ss Seq
CACTTGTCTCCACTCCACAGGAC
3' ss Score
9.47
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
CTTCCAAAGCCGACTCCACAGGAGGAGGAAACAGAAGAGGAACAGCAGTTCCGGGCCCTGTTCCAGCGAGTTGCTGGCGAG
Seq A exon
GACATGGAGGTGTCAGCTGAGGAGCTTGAATATGTTCTAAATGCTGTTCTGCAGAAGA
Seq C2 exon
AAACAGCCCTCAAGTTCAAGAGGCTGAGCCTGCTGTCCTGCAGAAACATCATCTCTCTGATGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031981_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.519 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=PU(0.1=0.0)
A:
PF138331=EF-hand_8=FE(31.1=100)
C2:
PF138331=EF-hand_8=FE(34.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCAAAGCCGACTCCACAG
R:
TGATGTTTCTGCAGGACAGCA
Band lengths:
132-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types