DreEX6063041 @ danRer10
Exon Skipping
Gene
ENSDARG00000091699 | capn2a
Description
calpain 2, (m/II) large subunit a [Source:ZFIN;Acc:ZDB-GENE-050320-69]
Coordinates
chr13:42608440-42608817:-
Coord C1 exon
chr13:42608752-42608817
Coord A exon
chr13:42608596-42608653
Coord C2 exon
chr13:42608440-42608504
Length
58 bp
Sequences
Splice sites
3' ss Seq
AATGTTTGCTTTTGCTTCAGGAC
3' ss Score
9.11
5' ss Seq
AGAGTAAGC
5' ss Score
6.31
Exon sequences
Seq C1 exon
GAAATGGTGTCTGAAGAAGAGGTTGATTCTGGCTTTAGGGGCCTGTTTACTAAACTTGCAGGAGAT
Seq A exon
GACATGGAGATCTCTGCTTCTGAGCTGCGAACGATTTTCAACAAAATAGTGGCAAAGA
Seq C2 exon
GAACCGATATCAAGACTGATGGTTTCAGTCTGGATACATGTAGGGTGATGGTCAACCTCATGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000091699-'14-17,'14-16,15-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.060 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=PU(0.1=0.0)
A:
PF138331=EF-hand_8=PU(31.1=95.0)
C2:
PF138331=EF-hand_8=FE(34.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGTCTGAAGAAGAGGTTGA
R:
CCATGAGGTTGACCATCACCC
Band lengths:
125-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]