RnoEX0016703 @ rn6
Exon Skipping
Gene
ENSRNOG00000034015 | Capn2
Description
calpain 2 [Source:RGD Symbol;Acc:2268]
Coordinates
chr13:100885656-100890458:-
Coord C1 exon
chr13:100890393-100890458
Coord A exon
chr13:100888838-100888895
Coord C2 exon
chr13:100885656-100885720
Length
58 bp
Sequences
Splice sites
3' ss Seq
TTCTGGTCATACGTCCACAGGAT
3' ss Score
7.84
5' ss Seq
AGCGTAAGT
5' ss Score
10.07
Exon sequences
Seq C1 exon
ATTGAAGCCAATGAGGAGGACATTGGAGATGGATTCAGAAGGCTGTTTGCTCAGCTGGCTGGAGAG
Seq A exon
GATGCGGAGATCTCTGCCTTTGAGCTGCAGACCATCTTGAGAAGAGTTCTAGCCAAGC
Seq C2 exon
GCGAAGACATCAAGTCAGATGGCTTCAGCATCGAGACCTGTAAGATCATGGTGGACATGCTGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034015-'25-27,'25-26,26-27
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.045 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=PU(0.1=0.0)
A:
PF138331=EF-hand_8=FE(31.1=100)
C2:
PF138331=EF-hand_8=FE(34.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGAAGCCAATGAGGAGGACA
R:
ATGTCCACCATGATCTTACAGGT
Band lengths:
124-182
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]