GgaEX6029104 @ galGal3
Exon Skipping
Gene
ENSGALG00000009360 | CAPN2
Description
NA
Coordinates
chr3:18802092-18803640:-
Coord C1 exon
chr3:18803575-18803640
Coord A exon
chr3:18803276-18803333
Coord C2 exon
chr3:18802092-18802156
Length
58 bp
Sequences
Splice sites
3' ss Seq
TATCTTCCTCTTTTCTGCAGGAT
3' ss Score
11.67
5' ss Seq
AGCGTAAGT
5' ss Score
10.07
Exon sequences
Seq C1 exon
ACTGAGATCGATGAAGATGACATTGAACCTAGCTTCAAAAAGCTTTTTGGGCAGTTGGCAGGAAGC
Seq A exon
GATGCAGAGATCTCTGCCTTCGAGCTGCGCAACATCCTGAATAAAATCCTGGCTAAGC
Seq C2 exon
GCCAAGATATTAAATCTGATGGCTTTAGCATTGAGACGTGCAAAATAATGGTTGACCTGCTAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009360-'16-17,'16-16,17-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.045 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=PU(0.1=0.0),PF0175117=Toprim=PU(0.9=4.5)
A:
PF138331=EF-hand_8=FE(31.1=100),PF0175117=Toprim=FE(17.8=100)
C2:
PF138331=EF-hand_8=FE(34.4=100),PF0175117=Toprim=FE(19.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGAGATCGATGAAGATGACAT
R:
AGCAGGTCAACCATTATTTTGCAC
Band lengths:
127-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]