DreEX6099415 @ danRer10
Exon Skipping
Gene
ENSDARG00000055592 | capn2b
Description
calpain 2, (m/II) large subunit b [Source:ZFIN;Acc:ZDB-GENE-050522-84]
Coordinates
chr22:26312969-26313318:-
Coord C1 exon
chr22:26313253-26313318
Coord A exon
chr22:26313115-26313172
Coord C2 exon
chr22:26312969-26313033
Length
58 bp
Sequences
Splice sites
3' ss Seq
CATACTGTACCTCTCTCTAGGAC
3' ss Score
10.41
5' ss Seq
AACGTAAGT
5' ss Score
10.74
Exon sequences
Seq C1 exon
GAGACTGTCTCAGATGATCAAGTTGATTCAACGTTTAGGGGGATGTTTGTAAAACTTGCCGGACCT
Seq A exon
GACATGGAAATCTCACCCCTGGAGCTCATGACCATCTTTAACAAAGTCATTGCAAAAC
Seq C2 exon
GCACTGACATTAAGTCGAGCACCTTCACTTTGGATACGTGTCGTGTCATGGTGAACCTCATGGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000055592-'19-21,'19-20,20-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.136 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=PU(0.1=0.0)
A:
PF138331=EF-hand_8=FE(31.7=100)
C2:
PF138331=EF-hand_8=FE(35.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGACTGTCTCAGATGATCAAGT
R:
AGGTTCACCATGACACGACAC
Band lengths:
124-182
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]