BtaEX6067961 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012778 | CAPN2
Description
Bos taurus calpain 2, (m/II) large subunit (CAPN2), mRNA. [Source:RefSeq mRNA;Acc:NM_001103086]
Coordinates
chr16:27828571-27833148:+
Coord C1 exon
chr16:27828571-27828636
Coord A exon
chr16:27830084-27830141
Coord C2 exon
chr16:27833084-27833148
Length
58 bp
Sequences
Splice sites
3' ss Seq
TTGGTTGTGTGTTTCCACAGGAC
3' ss Score
10.83
5' ss Seq
AGCGTGAGT
5' ss Score
8.2
Exon sequences
Seq C1 exon
ATTGACATCAGCGAGGATGACATCGATGATGGATTCAGGAGACTGTTCGCCCAGCTGGCCGGAGAG
Seq A exon
GACGCAGAGATTTCTGCCTTTGAGTTGCAGACAATCCTGAGAAGAGTGCTAGCAAAGC
Seq C2 exon
GCCAAGATATCAAGTCCGACGGCTTTAGCATTGAGACCTGCAAAATCATGGTGGACATGCTCGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012778-'19-17,'19-15,20-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=PU(0.1=0.0)
A:
PF138331=EF-hand_8=FE(31.1=100)
C2:
PF138331=EF-hand_8=FE(34.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGACATCAGCGAGGATGACA
R:
ATGTCCACCATGATTTTGCAGGT
Band lengths:
124-182
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]