HsaEX6002893 @ hg38
Exon Skipping
Gene
ENSG00000014216 | CAPN1
Description
calpain 1 [Source:HGNC Symbol;Acc:HGNC:1476]
Coordinates
chr11:65208055-65209387:+
Coord C1 exon
chr11:65208055-65208120
Coord A exon
chr11:65208205-65208262
Coord C2 exon
chr11:65209323-65209387
Length
58 bp
Sequences
Splice sites
3' ss Seq
CACCTCCTCTCTCTCCCCAGGAC
3' ss Score
13.43
5' ss Seq
AACGTGAGT
5' ss Score
9.54
Exon sequences
Seq C1 exon
CAAGTGCTCTCAGAAGAGGAGATTGACGAGAACTTCAAGGCCCTCTTCAGGCAGCTGGCAGGGGAG
Seq A exon
GACATGGAGATCAGCGTGAAGGAGTTGCGGACAATCCTCAATAGGATCATCAGCAAAC
Seq C2 exon
ACAAAGACCTGCGGACCAAGGGCTTCAGCCTAGAGTCGTGCCGCAGCATGGTGAACCTCATGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000014216-'59-63,'59-58,60-63
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=PU(0.1=0.0)
A:
PF138331=EF-hand_8=FE(31.1=100)
C2:
PF138331=EF-hand_8=FE(34.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCAGAAGAGGAGATTGACGA
R:
TCCATGAGGTTCACCATGCTG
Band lengths:
124-182
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains