MmuEX6030877 @ mm10
Exon Skipping
Gene
ENSMUSG00000024942 | Capn1
Description
calpain 1 [Source:MGI Symbol;Acc:MGI:88263]
Coordinates
chr19:5992350-5994086:-
Coord C1 exon
chr19:5994021-5994086
Coord A exon
chr19:5993874-5993931
Coord C2 exon
chr19:5992350-5992414
Length
58 bp
Sequences
Splice sites
3' ss Seq
CCATCCTTCTCTTCCCCTAGGAC
3' ss Score
12.8
5' ss Seq
AACGTAAGG
5' ss Score
7.34
Exon sequences
Seq C1 exon
AAAGTTCTCTCTGAAGAGGAGATTGATGACAACTTCAAGACCTTGTTCAGCAAGTTGGCAGGGGAT
Seq A exon
GACATGGAGATCAGCGTCAAGGAGCTACAGACCATCTTGAACAGGATCATTAGCAAAC
Seq C2 exon
ACAAAGACCTGCGCACTAATGGCTTCAGCCTGGAGTCGTGCCGCAGCATGGTGAACCTCATGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024942-'31-34,'31-32,32-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=PU(0.1=0.0)
A:
PF138331=EF-hand_8=FE(31.1=100)
C2:
PF138331=EF-hand_8=FE(34.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCTGAAGAGGAGATTGATGACA
R:
TCCATGAGGTTCACCATGCTG
Band lengths:
124-182
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types