GgaEX6029716 @ galGal3
Exon Skipping
Gene
ENSGALG00000010186 | CANX_CHICK
Description
NA
Coordinates
chr3:31553388-31553934:-
Coord C1 exon
chr3:31553869-31553934
Coord A exon
chr3:31553542-31553599
Coord C2 exon
chr3:31553388-31553452
Length
58 bp
Sequences
Splice sites
3' ss Seq
TAACTTTGCTCCTACTGCAGGAC
3' ss Score
7.72
5' ss Seq
GACGTGAGT
5' ss Score
9.22
Exon sequences
Seq C1 exon
GAAGAAATAACCGAGGACGACATTGAGGATGGTTTCAAGAATATGTTCCAGCAGCTGGCAGGGGAG
Seq A exon
GACATGGAAATCAGCGTCTTCGAGCTCAAGACGATTCTGAACAGAGTGATCGCCAGAC
Seq C2 exon
ACAAAGATCTGAAGACGGATGGCTTCAGTCTGGACTCCTGCCGCAACATGGTCAACCTGATGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010186-'17-15,'17-14,18-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=PU(0.1=0.0)
A:
PF138331=EF-hand_8=FE(31.1=100)
C2:
PF138331=EF-hand_8=FE(34.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAACCGAGGACGACATTGAGG
R:
TCCATCAGGTTGACCATGTTGC
Band lengths:
124-182
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]