DreEX0018792 @ danRer10
Exon Skipping
Gene
ENSDARG00000052702 | capn1a
Description
calpain 1, (mu/I) large subunit a [Source:ZFIN;Acc:ZDB-GENE-040426-1263]
Coordinates
chr13:42561512-42563136:-
Coord C1 exon
chr13:42563071-42563136
Coord A exon
chr13:42561684-42561741
Coord C2 exon
chr13:42561512-42561576
Length
58 bp
Sequences
Splice sites
3' ss Seq
AGTTTATATATTTATTTTAGGAT
3' ss Score
8.3
5' ss Seq
AACGTGAGT
5' ss Score
9.54
Exon sequences
Seq C1 exon
GAAGAAATTACAGAAGATGACATTGATGACTCCTTTAAGTCCCTGTTTGCCCAGCTGGCTGGAGAG
Seq A exon
GATATGGAGATATCTGTTCATGAACTCAAGACTATTCTCAACAGAGTAGTCTCCAAAC
Seq C2 exon
ACAAAGATGTGAAGACAGACGGCTTCAGCATGGACTCCTGCAGAACGATGGTCAACCTCCTGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000052702-'20-22,'20-21,21-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.076 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=PU(0.1=0.0)
A:
PF138331=EF-hand_8=FE(31.1=100)
C2:
PF138331=EF-hand_8=FE(34.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTACAGAAGATGACATTGATGACTCC
R:
ATCCAGGAGGTTGACCATCGT
Band lengths:
124-182
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]