DreEX6099403 @ danRer10
Exon Skipping
Gene
ENSDARG00000052748 | capn1b
Description
calpain 1, (mu/I) large subunit b [Source:ZFIN;Acc:ZDB-GENE-060503-491]
Coordinates
chr22:26284124-26284478:-
Coord C1 exon
chr22:26284413-26284478
Coord A exon
chr22:26284280-26284337
Coord C2 exon
chr22:26284124-26284188
Length
58 bp
Sequences
Splice sites
3' ss Seq
AAGTTCATCTAAACTTGTAGGAC
3' ss Score
4.84
5' ss Seq
AACGTAAGC
5' ss Score
7.35
Exon sequences
Seq C1 exon
GAGGCAGTCTCAGAGGAGAACATTGATGCCTCGTTTAAAAAGATGTTTGCTCAGCTGTCTGGAGAG
Seq A exon
GACATGGAGATTTCAGTTCACGAGCTCCGGACCATTCTGAACCGAGTGATGACAAAAC
Seq C2 exon
ACCGAGACTTAAAGACAGATGGGTTCAGTTTGGAGTCTTGTAGGTGCATGATCAACCTGATGGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000052748-'16-17,'16-16,17-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=PU(0.1=0.0)
A:
PF138331=EF-hand_8=FE(31.1=100)
C2:
PF138331=EF-hand_8=FE(34.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCAGAGGAGAACATTGATGCC
R:
GTCCATCAGGTTGATCATGCAC
Band lengths:
124-182
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]