RnoEX0016752 @ rn6
Exon Skipping
Gene
ENSRNOG00000018480 | Capn9
Description
calpain 9 [Source:RGD Symbol;Acc:70965]
Coordinates
chr19:57368864-57372533:+
Coord C1 exon
chr19:57368864-57368944
Coord A exon
chr19:57370077-57370134
Coord C2 exon
chr19:57372469-57372533
Length
58 bp
Sequences
Splice sites
3' ss Seq
CAATTGTCTCCACTCCACAGGAC
3' ss Score
8.66
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
CTTCCAAAGCCGACACCACAGGAGGAGGAAACCGAAGAGGAGCGGCAGTTCCGGGCCCTGTTCCGTCGAATTGCTGGTGAG
Seq A exon
GACATGGAGGTGTCAGCAGAAGAGCTTGAATATGTTCTAAATGCTGTTCTGCAAAAGA
Seq C2 exon
AAACAGCCCTCAAGTTCAAGAGGCTGAGCCTGCTTTCCTGCAGAAACATTATCTCCCTGATGGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018480-'15-13,'15-12,16-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.481 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0003627=EF-hand_1=PU(31.0=40.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCAAAGCCGACACCACAG
R:
CAGGGAGATAATGTTTCTGCAGGA
Band lengths:
140-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]