HsaEX1007287 @ hg38
Exon Skipping
Gene
ENSG00000170160 | CCDC144A
Description
coiled-coil domain containing 144A [Source:HGNC Symbol;Acc:HGNC:29072]
Coordinates
chr17:16707469-16711815:+
Coord C1 exon
chr17:16707469-16707542
Coord A exon
chr17:16708796-16709635
Coord C2 exon
chr17:16711679-16711815
Length
840 bp
Sequences
Splice sites
3' ss Seq
TTCCACTTTTGCATCTGCAGAAA
3' ss Score
9.17
5' ss Seq
GATGTAGGG
5' ss Score
1.09
Exon sequences
Seq C1 exon
CAGAACAAGACTCGGAGCTGACATCAGAGGAAGAGCAAGAAAGACTTAAAGGATGCGAAAATAAGCAGCCACAG
Seq A exon
AAAACGTCTCAAGAACCAGAAATGGCTAAGGATTGCGATAGAGAGGATATACCTATATATCCAGTACTTCCTCATGTGCAAAAATCTGAGGAAATGTGGATTGAACAAGGCAAATTAGAGTGGAAAAACCAATTAAAACTCGTCATAAATGAGTTAAAGCAGAGGTTTGGTGAAATTTATGAAAAATACAAAATTCCGGCTTGTCCTGAGGAAGAGCCACTACTTGATAACTCTACAAGAGGAACAGATGTAAAGGATATTCCCTTTAATTTGACAAATAACATACCTGGTTGTGAGGAAGAAGATGCATCTGAAATATCTGTCTCAGTGGTATTCGAGACATTTCCTGAACAAAAAGAACCCAGTCTCAAAAATATCATCCATCCATACTATCATCCATACTCTGGGTCCCAGGAACATGTTTGCCAGTCATCTTCTAAGTTTCATTTACATGAAAATAAATTAGACTGCGACAATGATAACAAACCAGGCATTGGACATATTTTTAGTACAGATAAGAACTTTCATAATGATGCAAGCACTAAGAAAGCAAGGAACCCAGAAGTGGTTATGGTTGAAATGAAAGAAGACCAAGAGTTTGATTTGCAAATGACAAAAAATATGAACCAAAATAGTGACAGTGGCAGTACAAACAACTATAAAAGCCTGAAACCTAAATTAGAAAATCTGAGTTCTTTACCACCAGATTCTGACAGAACATCAGAAGTATATCTACATGAAGAATTACAGCAAGACATGCAAAAGTTTAAGAATGAGGTCAACACATTAGAAGAAGAGTTCCTGGCTTTGAAGAAAGAAGATGTTCAACTTCATAAAGAT
Seq C2 exon
GTTGAAGAAGAAATGGAGAAGCACAGAAGTAATAGCACAGAATTATCAGGAACCCTAACTGATGGTACTACTGTTGGCAATGATGATGATGGACTAAATCAGCAGATTCCTAGGAAGGAAAATGGAGAGCATGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170160_MULTIEX1-3/3=2-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.653 C2=1.000
Domain overlap (PFAM):
C1:
PF044907=Pox_T4_C=FE(20.8=100)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACAAGACTCGGAGCTGACA
R:
TGTCATGCTCTCCATTTTCCTTCC
Band lengths:
208-1048
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains