HsaEX7108037 @ hg38
Exon Skipping
Gene
ENSG00000170160 | CCDC144A
Description
coiled-coil domain containing 144A [Source:HGNC Symbol;Acc:HGNC:29072]
Coordinates
chr17:16689537-16727740:+
Coord C1 exon
chr17:16689537-16695486
Coord A exon
chr17:16720198-16720231
Coord C2 exon
chr17:16727527-16727740
Length
34 bp
Sequences
Splice sites
3' ss Seq
GAATTGTTTTTTTTTTTCAGGCC
3' ss Score
9.57
5' ss Seq
GAGGTATTG
5' ss Score
7.44
Exon sequences
Seq C1 exon
CAAGATGTGATGCCTAATGCATTGGACAATCTGAACTGTAAGAGGACACCTTTAATTTAGTACATGTTAATCAAAGAACTTCTCTAAGTTAGGTTTTGCACGTTATGGGAGACAAACATGAAATAGACATAGTTTTGGTCTTTGAGGTGCTCATAATAGAATAGAGCTTTCTCTATTTAACTTCTGTGTTTTTTTCAACAGAATTTTCAAGGAAATCATTTATTCATTTGTCCACTTAACAAATAATTATCAAATGTCTTTTAGTACTAAGCATTTTTTTTCTAATGTTACAGAATACAGACATTTAAAAATACTGCTGGGGCCAGCACAGTGGTGCATGCCTGTAATCTCACCACTTTGGGAGGCTGAGATGGGAGGATCACTTGAGCCCAGAAGTTCGAGACCAGCCCGGGCAACATGACAAGACCTCATCTCTACTAAATTTTTTAAAAAACAATAAAACATTAGCTGGGCATGGTGCCAGGTGCCTGTACTTCCAG
Seq A exon
GCCTGCAGATAAAACATCTAATGAAAAGAACGAG
Seq C2 exon
ATTCTGCTAGCCTACCAAGAATCCAAGACACATTTTGTTTGTGTGAACACTTACTGAAACTTAAGAATAATCACTGTGACCAACTTACAGTAAAACTTAAACAAATGGAAAATATGGTCAGTGTACTACAAAATGAGCTATCTGAAACAAAAAAGACAAAATTACAGTTAGAACTTCAAAAAATTGAATGGGAGAAAGAGCTGTACGATTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170160-'3-20,'3-17,14-20=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.010
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCAACATGACAAGACCTCA
R:
TGGATTCTTGGTAGGCTAGCAGA
Band lengths:
115-149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains