MmuEX6006489 @ mm10
Exon Skipping
Gene
ENSMUSG00000007827 | Ankrd26
Description
ankyrin repeat domain 26 [Source:MGI Symbol;Acc:MGI:1917887]
Coordinates
chr6:118529434-118532369:-
Coord C1 exon
chr6:118532202-118532369
Coord A exon
chr6:118529843-118529876
Coord C2 exon
chr6:118529434-118529575
Length
34 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTTTTTTTATTTTAGGCC
3' ss Score
11.11
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
TGGTCCTGCCTTGCTTATGAAGGAAGCAAAGAAAATGGAAAATGAAAAATGGGTATCCAGAGAGCCCGCGAGGACGGCAATGAGTGAGCGCACCGGCTTACCAACTGGTGGCTGGCCACAAATGCAGGATGGTTCCTGCTGGAGTGACACGGACCAAAGTGAAGCCAG
Seq A exon
GCCCACAAAGAAAACATCTAGTAAACATAACAAG
Seq C2 exon
GACAGCGGGCAGACAGCTGCAGTGGACAACCTTGACGACTTTACTGAGTCGTCTGAAACAGCCTCTGAGGACCATGAGCTCCAGGGCCCTGATTCCGAGAGCATTTTGTGTGCGATCGAGCATCTCAGACTGGAGTGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000007827-'23-27,'23-26,24-27
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.688
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0157614=Myosin_tail_1=PU(2.4=16.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGTTCCTGCTGGAGTGAC
R:
TGGTCCTCAGAGGCTGTTTCA
Band lengths:
115-149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types