HsaEX0004417 @ hg38
Exon Skipping
Gene
ENSG00000107890 | ANKRD26
Description
ankyrin repeat domain 26 [Source:HGNC Symbol;Acc:HGNC:29186]
Coordinates
chr10:27043426-27046523:-
Coord C1 exon
chr10:27046353-27046523
Coord A exon
chr10:27044157-27044190
Coord C2 exon
chr10:27043426-27043567
Length
34 bp
Sequences
Splice sites
3' ss Seq
AAGGTATTTTTTTTTTTTAGGCC
3' ss Score
8.04
5' ss Seq
AAGGTACTG
5' ss Score
8.56
Exon sequences
Seq C1 exon
TAGTGGTCCTGCCTTGCAAATGAAGGAAGTAAAGAGCACTGAAAAAGAAAAACGGACCTCGAAAGAATCTGTGAATTCACCAGTGTTTGGGAAGGCCAGTTTACTAACTGGTGGCCTGCTACAAGTGGATGATGACAGCAGTTTAAGTGAAATAGATGAGGATGAAGGAAG
Seq A exon
GCCTACTAAGAAAACATCTAATGAAAAGAACAAG
Seq C2 exon
GTCAAAAACCAAATACAGTCTATGGATGATGTTGATGACTTAACTCAGTCATCTGAAACAGCCTCAGAGGATTGTGAGCTACCCCACTCTAGTTACAAGAATTTTATGTTGCTCATTGAACAACTTGGAATGGAGTGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107890-'40-48,'40-47,44-48
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.862 A=1.000 C2=0.542
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCTGCTACAAGTGGATGA
R:
TCTGAGGCTGTTTCAGATGACTG
Band lengths:
128-162
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development