HsaEX0004417 @ hg19
Exon Skipping
Gene
ENSG00000107890 | ANKRD26
Description
ankyrin repeat domain 26 [Source:HGNC Symbol;Acc:29186]
Coordinates
chr10:27332355-27335452:-
Coord C1 exon
chr10:27335282-27335452
Coord A exon
chr10:27333086-27333119
Coord C2 exon
chr10:27332355-27332496
Length
34 bp
Sequences
Splice sites
3' ss Seq
AAGGTATTTTTTTTTTTTAGGCC
3' ss Score
8.04
5' ss Seq
AAGGTACTG
5' ss Score
8.56
Exon sequences
Seq C1 exon
TAGTGGTCCTGCCTTGCAAATGAAGGAAGTAAAGAGCACTGAAAAAGAAAAACGGACCTCGAAAGAATCTGTGAATTCACCAGTGTTTGGGAAGGCCAGTTTACTAACTGGTGGCCTGCTACAAGTGGATGATGACAGCAGTTTAAGTGAAATAGATGAGGATGAAGGAAG
Seq A exon
GCCTACTAAGAAAACATCTAATGAAAAGAACAAG
Seq C2 exon
GTCAAAAACCAAATACAGTCTATGGATGATGTTGATGACTTAACTCAGTCATCTGAAACAGCCTCAGAGGATTGTGAGCTACCCCACTCTAGTTACAAGAATTTTATGTTGCTCATTGAACAACTTGGAATGGAGTGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107890_MULTIEX2-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.843 A=1.000 C2=0.542
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCTGCTACAAGTGGATGA
R:
TCTGAGGCTGTTTCAGATGACTG
Band lengths:
128-162
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)