RnoEX6014799 @ rn6
Exon Skipping
Gene
ENSRNOG00000006717 | Ankrd26
Description
ankyrin repeat domain 26 [Source:RGD Symbol;Acc:1310736]
Coordinates
chr4:150578151-150580212:-
Coord C1 exon
chr4:150580045-150580212
Coord A exon
chr4:150578534-150578567
Coord C2 exon
chr4:150578151-150578292
Length
34 bp
Sequences
Splice sites
3' ss Seq
TTATGATTTTTTTATTTTAGGCC
3' ss Score
10.13
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
TGGTCCTACCTTGCTTATGAAGGAAGCAGAGAAAACGGAGAATGAGAAATGGGTATCTAAAGAGTCTGTTATGATGGCTGTGACTGAGAGCGCTGGCTTGCCGACTGGCGGCTCACTCCAAATGCAGGATGGTTCCCACCTGAGTGACTCGGACCAAAGTGAATCCAG
Seq A exon
GCCTGCAAAGAAAACATCTAATAAAAATAACAAG
Seq C2 exon
GACAGCAAGCAGACAGCTGCTGTGGACAACCTTGACAACTTAACTGAGTCATCTGAAATGTCCTCTGAGGACCATGAGCTCCAGGGCCCTGACTACGAGCGCATTTTGTGTGAAATCGAACATCTCAGACTGGAGTGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006717-'28-25,'28-24,29-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.583
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGAGTGACTCGGACCAAA
R:
GAGCTCATGGTCCTCAGAGGA
Band lengths:
112-146
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]