GgaEX1002197 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BZ82]
Coordinates
chr1:24088636-24089873:+
Coord C1 exon
chr1:24088636-24088767
Coord A exon
chr1:24089486-24089519
Coord C2 exon
chr1:24089735-24089873
Length
34 bp
Sequences
Splice sites
3' ss Seq
AATGTATTTTTGTTTTCCAGACC
3' ss Score
9.48
5' ss Seq
AAGGTACTG
5' ss Score
8.56
Exon sequences
Seq C1 exon
TAAATCTGTTCTGAATGCAAAAGGTATGAAGAAAAATGAGAAGAAAAGGCAGTCTTCAAAGCAGAGGGCTAATCGGAAGATTCAATTAATGGATGATAGCACTTTCAGTGAAACATCTCAAGATGAAGAAAG
Seq A exon
ACCTGCAACAAAAACAGGGAGCGAAAAGAACAAG
Seq C2 exon
GGCAGCATGCAAATGGATGTTACTGATGACCTTGATTTAACACAGTCATCTGATACAACTACAGAGGATGCTGAGTTGCCAACTTCAACTTACAAAGAAGCTATGTTGCTGTTTGAACAGCTTAGTGTGGATCATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009104_MULTIEX2-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.655
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000014827fB4043
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAAAGGCAGTCTTCAAAGCAGA
R:
AACATCCATTTGCATGCTGCC
Band lengths:
112-146
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]