HsaINT0029094 @ hg38
Intron Retention
Gene
ENSG00000170160 | CCDC144A
Description
coiled-coil domain containing 144A [Source:HGNC Symbol;Acc:HGNC:29072]
Coordinates
chr17:16705151-16707542:+
Coord C1 exon
chr17:16705151-16705399
Coord A exon
chr17:16705400-16707468
Coord C2 exon
chr17:16707469-16707542
Length
2069 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACA
5' ss Score
8.92
3' ss Seq
TGAATGTTTGGATTTTGCAGCAG
3' ss Score
5.82
Exon sequences
Seq C1 exon
ATTGGCATCCTACTAATTTGACCCTTAGTGATGAGACTTGTCAGAGATCCAAGAATCTGAAAGTTGATGATAAATGTCCATCTGTATCACCATCAATGCCTGAAAATCAGTCAGCAACCAAAGAACTGGGACAGATGAACTTAACAGAACGAGAAAAGATGGACACTGGAGTTGTACTTCTCTCAGGGAATGATACTCTCCATGACCTGTGCCAATCACAGCTACCAGAAAACAAAGAGAGCAAAGAAG
Seq A exon
GTAACAAAGAAGCATAGAGAATTCAGTCCTAGAGTGCCTCTGCTTGGCTGCATAGAGCTATAGTTCTGACTTAAAAAAACTTTTTCTGGTAAAATGTGCTTTGTGTTTACTCACCTTTTGCACTGAACAGAATACTTTTTGGCAGGATATTTGTGTTCTTCCTTTAACCAAAGCAACATCTAGATAACAGAGAATTAGGGGAAAGCATGATTTTCTTTAGGAAGTAGGATTATATTTAGAATATAGGGACTAAGTATGTTTAGGGACTAACATAGGATTATATTTAGGATAACTTAGTAGAGACCTAAAGATTGCTGACTCAAACACAATGTGGTTTCTTTGCTTTATTTTTACAGCTCTGAATTCACAGCTGTTAGTTATAACTATATGCACTACAATTTAAAAGACACCTTCCCACACCTGTAATCTCAGCACTTTAGGAGGCCGAGGTGGGTGGATCATGAGGTCAGTAGTTCGAGACCAGCCTGGCCAATATGGTGAAACCCCATCTCTACTAAAAATACAAAAAAAAAACTAGCTGGGCATGGTGGTGAACGCTTGTAGTCCCAGCTACTCAGGAGGCTGAAGCAGGAGAATCGCTGGAACCCAGAAGGTGGAGGTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAACCTGGGCAATAGAGGAAGACTCCGGTCTCAAAAAACAAAAACAAAAAAACACCTTCCAAAAGCAAATATTAAGTGACTTCCTATCGTTTCTATGACTTTATGTATTATAGAATTGACTTTCCAAGTCAGTAATTAATGAGACTTATTGAGAATTTGCTGCATAGTATCTCCTTGGCTGTGTCCACATGAGCTACCACCTTGCGTTAATAAATGTGTTCGCTAGGGATGTTGGTTTTGGCATTGACAGTGTTCTATCACCAATGCAAATAAGACCAGGGACCACTCTTGAGAACATTAATGTCCAAGCATCTTAAAGTTGTACGTAAGGCTTTCATAATGTGACTTCTGCTCAGCTCTCCATCTTTAGCCCTTTCCCCTGTGTGCCCTTTCTCTGGCCTTACTGAACTGCTGGTCCTGTCCTGCTGACCCATCCTTCGACTGCAGGCAAACACATACACTCTTTCAGGCCTCTTTCTGCCTTTTGTTGCTGCCTGTCATGCTCTCACTCTTTCCTGTCCCCTACCCCTTCTAATTAGGCTAGCCTCACTCTTTAAGCCTCAGCTCGGGCAGGATCTCTAGAAAAGTCATCTCTGACATGCTTTCTTTTCACTCTTTAAATCCTAGTGCCTAGCACATAGCAAGACTCAATACATAATTGCTGAGTAAAATAGATAATGACTCTTTGTACAAAGATGATTTTCAAGATTGTTCCCTACAGTCAAGGAGCAAAGGGAATAGACATGTAAAGCAATAATTGACAGTTCGGGTGGTGGAGATGCAGTAGAAAAATCAGTTCTAGGGCAGCCCTAAGGAAGGAGATACCTAGATACCTGTTTACCTGGGGAAAGATGAGGATGAGGGTCAACTTCACCTAGCAGTCTGTTTTTTATTTTATGTATTTTATTTATTTATTTTTAGCAGTCTGTTTTAAAAGATGAAAATATTAATACGTTTGTCAGAATAATACAGGGAACCATTTCAGATGTTAGGAAGTGGTTGTACACCAATAAAGGTGTCCACAGTCATTTTGGAAATCATTAATAAGGTACTATTATGAAGTGGAGAACAGTATGCAGCATTGCCTGATAATATTACTACTGCATTCCAAAATTTTGTTTTGTTTGTGATGGCTTTGTTCATTGATGTTGGGTGGATGAATCTGTGAGTGAATCTTCAACATGATTGTATTTCTTTAACCTGGTGGCATCTAGTGTCTCCCAGAAAGTGGTTTGTTGAAGTTTTGGAGAATTAGAAGTATTTCTTAAAGAAGTAAGTATTCCACTAAAGATCAAGCTTCATTTAAACTCTCAATTTATGAAATAAAATGAAATGTAATTTAAAATCTATTTTTATAAAGACTATGTCTTTTATCTAACTGTTCTAAGTAGTTTAACTGAATGTTTGGATTTTGCAG
Seq C2 exon
CAGAACAAGACTCGGAGCTGACATCAGAGGAAGAGCAAGAAAGACTTAAAGGATGCGAAAATAAGCAGCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170160:ENST00000399273:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.990 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF044907=Pox_T4_C=PU(68.3=97.6)
A:
NA
C2:
PF044907=Pox_T4_C=FE(20.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains