HsaALTA1064215-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000170160 | CCDC144A
Description
coiled-coil domain containing 144A [Source:HGNC Symbol;Acc:HGNC:29072]
Coordinates
chr17:16705151-16707542:+
Coord C1 exon
chr17:16705151-16705399
Coord A exon
NA
Coord C2 exon
chr17:16707472-16707542
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACA
5' ss Score
8.92
3' ss Seq
ATGTTTGGATTTTGCAGCAGAAC
3' ss Score
3.87
Exon sequences
Seq C1 exon
ATTGGCATCCTACTAATTTGACCCTTAGTGATGAGACTTGTCAGAGATCCAAGAATCTGAAAGTTGATGATAAATGTCCATCTGTATCACCATCAATGCCTGAAAATCAGTCAGCAACCAAAGAACTGGGACAGATGAACTTAACAGAACGAGAAAAGATGGACACTGGAGTTGTACTTCTCTCAGGGAATGATACTCTCCATGACCTGTGCCAATCACAGCTACCAGAAAACAAAGAGAGCAAAGAAG
Seq A exon
NA
Seq C2 exon
AACAAGACTCGGAGCTGACATCAGAGGAAGAGCAAGAAAGACTTAAAGGATGCGAAAATAAGCAGCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170160-4-11,4-10-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.990 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF044907=Pox_T4_C=PU(68.3=97.6)
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCCAATCACAGCTACCAGA
R:
GGCTGCTTATTTTCGCATCCT
Band lengths:
108-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains