HsaINT0029094 @ hg19
Intron Retention
Gene
ENSG00000170160 | CCDC144A
Description
coiled-coil domain containing 144A [Source:HGNC Symbol;Acc:29072]
Coordinates
chr17:16608465-16610856:+
Coord C1 exon
chr17:16608465-16608713
Coord A exon
chr17:16608714-16610782
Coord C2 exon
chr17:16610783-16610856
Length
2069 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACA
5' ss Score
8.92
3' ss Seq
TGAATGTTTGGATTTTGCAGCAG
3' ss Score
5.82
Exon sequences
Seq C1 exon
ATTGGCATCCTACTAATTTGACCCTTAGTGATGAGACTTGTCAGAGATCCAAGAATCTGAAAGTTGATGATAAATGTCCATCTGTATCACCATCAATGCCTGAAAATCAGTCAGCAACCAAAGAACTGGGACAGATGAACTTAACAGAACGAGAAAAGATGGACACTGGAGTTGTACTTCTCTCAGGGAATGATACTCTCCATGACCTGTGCCAATCACAGCTACCAGAAAACAAAGAGAGCAAAGAAG
Seq A exon
GTAACAAAGAAGCATAGAGAATTCAGTCCTAGAGTGCCTCTGCTTGGCTGCATAGAGCTATAGTTCTGACTTAAAAAAACTTTTTCTGGTAAAATGTGCTTTGTGTTTACTCACCTTTTGCACTGAACAGAATACTTTTTGGCAGGATATTTGTGTTCTTCCTTTAACCAAAGCAACATCTAGATAACAGAGAATTAGGGGAAAGCATGATTTTCTTTAGGAAGTAGGATTATATTTAGAATATAGGGACTAAGTATGTTTAGGGACTAACATAGGATTATATTTAGGATAACTTAGTAGAGACCTAAAGATTGCTGACTCAAACACAATGTGGTTTCTTTGCTTTATTTTTACAGCTCTGAATTCACAGCTGTTAGTTATAACTATATGCACTACAATTTAAAAGACACCTTCCCACACCTGTAATCTCAGCACTTTAGGAGGCCGAGGTGGGTGGATCATGAGGTCAGTAGTTCGAGACCAGCCTGGCCAATATGGTGAAACCCCATCTCTACTAAAAATACAAAAAAAAAACTAGCTGGGCATGGTGGTGAACGCTTGTAGTCCCAGCTACTCAGGAGGCTGAAGCAGGAGAATCGCTGGAACCCAGAAGGTGGAGGTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAACCTGGGCAATAGAGGAAGACTCCGGTCTCAAAAAACAAAAACAAAAAAACACCTTCCAAAAGCAAATATTAAGTGACTTCCTATCGTTTCTATGACTTTATGTATTATAGAATTGACTTTCCAAGTCAGTAATTAATGAGACTTATTGAGAATTTGCTGCATAGTATCTCCTTGGCTGTGTCCACATGAGCTACCACCTTGCGTTAATAAATGTGTTCGCTAGGGATGTTGGTTTTGGCATTGACAGTGTTCTATCACCAATGCAAATAAGACCAGGGACCACTCTTGAGAACATTAATGTCCAAGCATCTTAAAGTTGTACGTAAGGCTTTCATAATGTGACTTCTGCTCAGCTCTCCATCTTTAGCCCTTTCCCCTGTGTGCCCTTTCTCTGGCCTTACTGAACTGCTGGTCCTGTCCTGCTGACCCATCCTTCGACTGCAGGCAAACACATACACTCTTTCAGGCCTCTTTCTGCCTTTTGTTGCTGCCTGTCATGCTCTCACTCTTTCCTGTCCCCTACCCCTTCTAATTAGGCTAGCCTCACTCTTTAAGCCTCAGCTCGGGCAGGATCTCTAGAAAAGTCATCTCTGACATGCTTTCTTTTCACTCTTTAAATCCTAGTGCCTAGCACATAGCAAGACTCAATACATAATTGCTGAGTAAAATAGATAATGACTCTTTGTACAAAGATGATTTTCAAGATTGTTCCCTACAGTCAAGGAGCAAAGGGAATAGACATGTAAAGCAATAATTGACAGTTCGGGTGGTGGAGATGCAGTAGAAAAATCAGTTCTAGGGCAGCCCTAAGGAAGGAGATACCTAGATACCTGTTTACCTGGGGAAAGATGAGGATGAGGGTCAACTTCACCTAGCAGTCTGTTTTTTATTTTATGTATTTTATTTATTTATTTTTAGCAGTCTGTTTTAAAAGATGAAAATATTAATACGTTTGTCAGAATAATACAGGGAACCATTTCAGATGTTAGGAAGTGGTTGTACACCAATAAAGGTGTCCACAGTCATTTTGGAAATCATTAATAAGGTACTATTATGAAGTGGAGAACAGTATGCAGCATTGCCTGATAATATTACTACTGCATTCCAAAATTTTGTTTTGTTTGTGATGGCTTTGTTCATTGATGTTGGGTGGATGAATCTGTGAGTGAATCTTCAACATGATTGTATTTCTTTAACCTGGTGGCATCTAGTGTCTCCCAGAAAGTGGTTTGTTGAAGTTTTGGAGAATTAGAAGTATTTCTTAAAGAAGTAAGTATTCCACTAAAGATCAAGCTTCATTTAAACTCTCAATTTATGAAATAAAATGAAATGTAATTTAAAATCTATTTTTATAAAGACTATGTCTTTTATCTAACTGTTCTAAGTAGTTTAACTGAATGTTTGGATTTTGCAG
Seq C2 exon
CAGAACAAGACTCGGAGCTGACATCAGAGGAAGAGCAAGAAAGACTTAAAGGATGCGAAAATAAGCAGCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170160-CCDC144A:NM_014695:3
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.993 A=NA C2=0.989
Domain overlap (PFAM):
C1:
PF044907=Pox_T4_C=PU(70.3=98.8),PF118353=DUF3355=PU(48.3=69.0)
A:
NA
C2:
PF044907=Pox_T4_C=FE(20.8=100),PF118353=DUF3355=FE(24.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)