HsaEX7108035 @ hg38
Exon Skipping
Gene
ENSG00000170160 | CCDC144A
Description
coiled-coil domain containing 144A [Source:HGNC Symbol;Acc:HGNC:29072]
Coordinates
chr17:16720517-16731983:+
Coord C1 exon
chr17:16720517-16720658
Coord A exon
chr17:16727527-16727740
Coord C2 exon
chr17:16731800-16731983
Length
214 bp
Sequences
Splice sites
3' ss Seq
ACCTTTTCTCCCTGACACAGATT
3' ss Score
9.12
5' ss Seq
GAGGTATGA
5' ss Score
8.55
Exon sequences
Seq C1 exon
GTCAAAAACCAAATATATCCTGAGGCTGACTTTGCTGACTCAATGGAGCCATCTGAAATAGCCTCAGAGGATTGTGAATTGTCTCACTCTGTTTATGAGAATTTTATGTTGCTGATTGAACAACTTAGAATGGAGTATAAAG
Seq A exon
ATTCTGCTAGCCTACCAAGAATCCAAGACACATTTTGTTTGTGTGAACACTTACTGAAACTTAAGAATAATCACTGTGACCAACTTACAGTAAAACTTAAACAAATGGAAAATATGGTCAGTGTACTACAAAATGAGCTATCTGAAACAAAAAAGACAAAATTACAGTTAGAACTTCAAAAAATTGAATGGGAGAAAGAGCTGTACGATTTGAG
Seq C2 exon
ACTTGCCTTAAAACAAGAAAATGAGGAGAAAAGAAATGCCGATATGTTGTATAATAAAGATAGTGAACAGTTAAGAATAAAAGAAGAGGAGTGTGGGAAAGTGGTTGAAACAAAGCAACAACTTAAATGGAATCTGAGAAGACTTGTTAAGGAATTGAGGACAGTAAGAAATAACTTGGATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170160-'15-22,'15-20,19-22=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.479 A=0.010 C2=0.097
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGAGGCTGACTTTGCTGAC
R:
TCTTACTGTCCTCAATTCCTTAACA
Band lengths:
293-507
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains