GgaEX7000336 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BZ82]
Coordinates
chr1:24089735-24093759:+
Coord C1 exon
chr1:24089735-24089873
Coord A exon
chr1:24091373-24091586
Coord C2 exon
chr1:24093576-24093759
Length
214 bp
Sequences
Splice sites
3' ss Seq
TACTTTTTGTCTCCATATAGATT
3' ss Score
9.18
5' ss Seq
TAAGTATGT
5' ss Score
4.58
Exon sequences
Seq C1 exon
GGCAGCATGCAAATGGATGTTACTGATGACCTTGATTTAACACAGTCATCTGATACAACTACAGAGGATGCTGAGTTGCCAACTTCAACTTACAAAGAAGCTATGTTGCTGTTTGAACAGCTTAGTGTGGATCATACAG
Seq A exon
ATTCTGCTATTTTGCTGAAAATTCAAAACATACTTCTTGAATATGAACAGATAATAGATTGTGAAAAAAAACGCTACACAGCTCTCTGGAGAGAAGTCAAGAAGTTGGAAAGTGAAAAAGAGGAGTCACAGTTAATAGCAGAAGAGACTCAAGATTTGAAATCCATATTGGCTCACCAAGAAATGGAATTGAAAAGTGATATCCAAAGCCTTAA
Seq C2 exon
ATTTTCTTTGAAACAAGAAGAGGAAAAGAGGCTTAGAGCTGAAATGCAATATGAAAAAATGAGAGAACAACTAAGGAGGAAAGAGGATCAATATTGTAGAGAAACAGAGGAGAGACAACAACTTGAGTTGCATGCAAGGAATTTAGAAACAGAGTTAATAACGCTGAGAAAGCTCATGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009104-'27-26,'27-24,28-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.655 A=0.111 C2=0.274
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCATGCAAATGGATGTTACT
R:
ACTCTGTTTCTAAATTCCTTGCATGC
Band lengths:
293-507
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]