Special

MmuEX0005065 @ mm9

Exon Skipping

Gene
ENSMUSG00000007827 | Ankrd26
Description
ankyrin repeat domain 26 [Source:MGI Symbol;Acc:MGI:1917887]
Coordinates
chr6:118475751-118479593:-
Coord C1 exon
chr6:118479452-118479593
Coord A exon
chr6:118477674-118477887
Coord C2 exon
chr6:118475751-118475934
Length
214 bp
Sequences
Splice sites
3' ss Seq
TCTTATTTTTCCTCATTCAGATA
3' ss Score
10.16
5' ss Seq
GAGGTGTGC
5' ss Score
5.35
Exon sequences
Seq C1 exon
GACAGCGGGCAGACAGCTGCAGTGGACAACCTTGACGACTTTACTGAGTCGTCTGAAACAGCCTCTGAGGACCATGAGCTCCAGGGCCCTGATTCCGAGAGCATTTTGTGTGCGATCGAGCATCTCAGACTGGAGTGTAAAG
Seq A exon
ATACTGCTAGTCTATTGAAAATCCGGGATGCCGTTTATTCATATAAACGATTAATAGAACTTAAAAGAAGCCACTGTGAACTACTTACAGGAAAACTGAAAAGAATGGAAAACAAATATAAGGGATTGCAGAAGGAAATGTCAGAGACAGAAGAAGTGAAGTCACGGTTGGAACATGAAAAGGTCGGATGGGAACAGGAGCTCTGCAGGCTGAG
Seq C2 exon
ATTTGCACTGAAACAAGAGGAAGAGAAGAGGAGGAGTGCAGACCAGCTTTCTGAGAAAACCTCGGAGCAGCTTAGAAGGAAAGGCGAGCAGTGTCAGAGTGAGGTGGAAGCCAGGCAGCAGCTTGAAGCCTCTCTCAGAACCCTGGAGATGGAGCTGAAGACGGTGAAAAGCCATCTCAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000007827-'24-26,'24-24,26-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
ORF disruption upon sequence exclusion





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.688 A=0.264 C2=0.452
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0157614=Myosin_tail_1=PU(2.4=16.7)

							
A:
PF0157614=Myosin_tail_1=FE(21.6=100)

							
C2:
PF0157614=Myosin_tail_1=FE(18.5=100)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000108449





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000007971
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr10:27039965-27040178 
HIGH PSI
HsaEX6087932
(ANKRD26)
Human
(hg19)
chr10:27328894-27329107 
HIGH PSI
HsaEX6087932
(ANKRD26)
Rat
(rn6)
chr4:150575985-150576198 
HIGH PSI
RnoEX6014801
(Ankrd26)
Cow
(bosTau6)
chr13:17931168-17931381 
ALTERNATIVE
BtaEX0003524
(ANKRD26)
Chicken
(galGal4)
chr1:24091373-24091586 
HIGH PSI
GgaEX7000336
([1])
Chicken
(galGal3)
chr1:26117838-26118051 
Zebrafish
(danRer10)
chr25:3480369-3480582 
HIGH PSI
DreEX6100471
(ANKRD7)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
CAGACAGCTGCAGTGGACAAC

				
R: 
TCTTCAGCTCCATCTCCAGGG

				
Band lengths: 
294-508

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"