RnoEX6014801 @ rn6
Exon Skipping
Gene
ENSRNOG00000006717 | Ankrd26
Description
ankyrin repeat domain 26 [Source:RGD Symbol;Acc:1310736]
Coordinates
chr4:150570817-150578292:-
Coord C1 exon
chr4:150578151-150578292
Coord A exon
chr4:150575985-150576198
Coord C2 exon
chr4:150570817-150571000
Length
214 bp
Sequences
Splice sites
3' ss Seq
GTCTCTGTCTCCTCATCCAGATA
3' ss Score
10.22
5' ss Seq
GAGGTGTGC
5' ss Score
5.35
Exon sequences
Seq C1 exon
GACAGCAAGCAGACAGCTGCTGTGGACAACCTTGACAACTTAACTGAGTCATCTGAAATGTCCTCTGAGGACCATGAGCTCCAGGGCCCTGACTACGAGCGCATTTTGTGTGAAATCGAACATCTCAGACTGGAGTGTAAAG
Seq A exon
ATACTGTTAGTCTGTTGAAAATCCGCGATGCTGTTTATTCTTATAAGAGATTAATAGAACTTAAAAGGAGCCACTGCGAGCTACTCACAGGGAAACTGAAAAGAGTGGAAAGCAAATGTAAGGGACTACAGAAGGAGGTGTCAGAGACGGAAGAAGTGAGGTCACGGCTGGAGCATGAGAAGCTCGCGTGGGAACAGGAGCTCTGCAGCCTGAG
Seq C2 exon
ATTTGCACTGAAACAAGAGGAAGAGAAGAGGAGAAGTGCGGATCAGCTTTCCGAGAGGATGGTGGAGCAGCTTAGAAGGAAAGGAGAGCAGTATCAGGGCGAGGTGGAAGCCAGACAGCAGCTTGAAGTCTCCCTCAGAAGCCTGGAGATGGAGCTGAAGACAGTGAGAAGTCACCTCAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006717-'30-27,'30-26,32-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.583 A=0.014 C2=0.210
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGACAGCTGCTGTGGACAAC
R:
TTCAGCTCCATCTCCAGGCTT
Band lengths:
292-506
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]