HsaEX6087932 @ hg19
Exon Skipping
Gene
ENSG00000107890 | ANKRD26
Description
ankyrin repeat domain 26 [Source:HGNC Symbol;Acc:29186]
Coordinates
chr10:27326800-27332496:-
Coord C1 exon
chr10:27332355-27332496
Coord A exon
chr10:27328894-27329107
Coord C2 exon
chr10:27326800-27326983
Length
214 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTCTTCCTGATACAGATT
3' ss Score
9.14
5' ss Seq
GAGGTATGA
5' ss Score
8.55
Exon sequences
Seq C1 exon
GTCAAAAACCAAATACAGTCTATGGATGATGTTGATGACTTAACTCAGTCATCTGAAACAGCCTCAGAGGATTGTGAGCTACCCCACTCTAGTTACAAGAATTTTATGTTGCTCATTGAACAACTTGGAATGGAGTGTAAAG
Seq A exon
ATTCTGTTAGCCTATTGAAAATCCAGGATGCAGCTCTTTCATGTGAAAGATTATTAGAACTTAAAAAAAATCACTGTGAACTACTTACAGTAAAAATTAAAAAAATGGAAGACAAGGTTAATGTACTACAAAGGGAGCTATCTGAAACAAAAGAAATAAAATCACAGTTAGAGCATCAAAAAGTTGAATGGGAACGAGAACTGTGCTCTTTGAG
Seq C2 exon
ATTTAGCTTAAACCAAGAAGAAGAGAAGAGAAGAAATGCTGATACGTTGTATGAAAAAATTAGGGAACAGTTAAGAAGAAAAGAAGAGCAATATAGGAAAGAAGTTGAAGTGAAACAACAGCTTGAACTGAGTCTCCAAACACTGGAGATGGAATTGAGGACTGTAAAAAGTAATTTGAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107890-'29-31,'29-30,30-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.542 A=0.000 C2=0.145
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGTCTATGGATGATGTTGATGACT
R:
CAGTCCTCAATTCCATCTCCAGTG
Band lengths:
292-506
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)